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Mariko’s death galvanizes Toranaga’s cause. It also breaks Blackthorne’s heart. He realizes he has fallen in love with her—a love that was impossible and never consummated, but that has made him a new man.

The story begins in 1600, in feudal Japan. An English ship, the Erasmus , piloted by the experienced sailor , washes ashore near the coast of a village controlled by Lord Yoshi Toranaga, a powerful regional lord. Blackthorne is a "barbarian" (a foreigner) and a Protestant heretic in the eyes of the Portuguese Jesuits who already have a strong foothold in Japan. The Jesuits, led by Father Carlo dell’Aqua, control the trade in guns, silk, and knowledge, and they see Blackthorne as a threat to their power. Shogun

Blackthorne, in turn, is initially arrogant and dismissive of Japanese culture. But he is assigned a translator and caretaker: a beautiful, intelligent, and tragic woman named . Mariko is a Christian convert (Catholic), the daughter of a disgraced samurai lord who was forced to commit seppuku (ritual suicide). She is married to a hot-headed samurai, Buntaro, but her loyalty, intelligence, and spiritual depth make her the perfect bridge between Blackthorne and Toranaga. Mariko’s death galvanizes Toranaga’s cause

Toranaga now has the moral high ground and the military advantage. Winter has passed. Ishido’s coalition is fracturing. Toranaga marches west. The final battle is not shown directly in the novel (it is described in retrospect), but we see the aftermath: Toranaga’s brilliant feint, his betrayal of his own ally (the traitor Lord Onoshi), and his total victory. The story begins in 1600, in feudal Japan

Blackthorne carries two dangerous secrets: he has a letter from his English king (aiming to open trade with Japan) and he is a skilled military navigator. He is also fascinated by Japan, its rigid social codes, its honor-based culture, and its samurai warriors.